journals

Open-access publishing by NU researchers in 2011: Part 1, journal articles

Researchers at Northestern University published 29 articles in open-access scholarly journals in 2011. By choosing open access journals over those that are restricted to readers with subscriptions, our researchers are helping to increase knowledge on a global level. In fact, more Northeastern authors published in the open-access journal PLoS ONE than in any other journal, open or subscription-based, in 2011. Watch for my next post on open-access books produced by Northeastern authors in 2011! For more information about Open Access and why it’s important, check out our research guide on the topic. Complete list of articles: (NU authors are listed in bold.) Altaboli, Ahamed, and Yingzi Lin. 2011. Investigating effects of screen layout elements on interface and screen design aesthetics. Advances in Human-Computer Interaction 2011, 659758. Published online: 2011. http://dx.doi.org/10.1155/2011/659758 Bagrow, James P., Dashun Wang, and Albert-Laszlo Barabasi. 2011. Collective response of human populations to large-scale emergencies. PLoS ONE 6(3), e17680. Published online: March 30, 2011. http://dx.doi.org/10.1371/journal.pone.0017680 Bellon, Marc, Enrique F. Moreno, and Fidel A. Schaposnik. 2011. A note on holography and phase transitions. Advances in High Energy Physics 2011, 917127. Published online: 2011. http://dx.doi.org/10.1155/2011/917127 Benson, Ryan W., Matthew D. Norton, Ida Lin, William S. Du Comb, and Veronica G. Godoy. 2011. An active site aromatic triad in Escherichia coli DNA pol IV coordinates cell survival and mutagenesis in different DNA damaging agents. PLoS ONE 6(5), e19944. Published online: May 17, 2011. http://dx.doi.org/10.1371/journal.pone.0019944 Carneiro, Katia, Claudia Donnet, Tomas Rejtar, Barry L. Karger, Gustavo A. Barisone, Elva Diaz, Sandhya Kortagere, Joan M. Lemire, and Michael Levin. 2011. Histone deacetylase activity is necessary for left-right patterning during vertebrate development. BMC Developmental Biology 11, 29. Published online: May 20, 2011. http://dx.doi.org/10.1186/1471-213x-11-29 Combosch, David J., and Steven V. Vollmer. 2011. Population genetics of an ecosystem-defining reef coral Pocillopora damicornis in the Tropical Eastern Pacific. PLoS ONE 6(8), e21200. Published online: August 9, 2011. http://dx.doi.org/10.1371/journal.pone.0021200 Dauth, Stephanie, Ruxandra F. Sirbulescu, Silvia Jordans, Maren Rehders, Linda Avena, Julia Oswald, Alexander Lerchl, Paul Saftig, and Klaudia Brix. 2011. Cathepsin K deficiency in mice induces structural and metabolic changes in the central nervous system that are associated with learning and memory deficits. BMC Neuroscience 12, 74. Published online: July 27, 2011. http://dx.doi.org/10.1186/1471-2202-12-74 DeMaso, Christina R., Ismar Kovacevic, Alper Uzun, and Erin J. Cram. 2011. Structural and functional evaluation of C. elegans filamins FLN-1 and FLN-2. PLoS ONE 6(7), e22428. Published online: July 25, 2011. http://dx.doi.org/10.1371/journal.pone.0022428 Diaz-Gonzalez, Rosario, F. Matthew Kuhlmann, Cristina Galan-Rodriguez, Luciana da Silva, Manuel Madeira Saldivia, Caitlin E. Karver, Ana Rodriguez, Stephen M. Beverley, Miguel Navarro, and Michael P. Pollastri. 2011. The susceptibility of trypanosomatid pathogens to PI3/mTOR kinase inhibitors affords a new opportunity for drug repurposing. PLoS Neglected Tropical Diseases 5(8), e1297. Published online: August 2011. http://dx.doi.org/10.1371/journal.pntd.0001297 Evans, James D., Suresh Peddigari, Kathy R. Chaurasiya, Mark C. Williams, and Sandra L. Martin. 2011. Paired mutations abolish and restore the balanced annealing and melting activities of ORF1p that are required for LINE-1 retrotransposition. Nucleic Acids Research 39(13), 5611-5621. Published online: March 26, 2011. http://dx.doi.org/10.1093/nar/gkr171 Fiamegos, Yiannis C., Panagiotis L. Kastritis, Vassiliki Exarchou, Haley Han, Alexandre M. J. J. Bonvin, Jacques Vervoort, Kim Lewis, Michael R. Hamblin, and George P. Tegos. 2011. Antimicrobial and efflux pump inhibitory activity of caffeoylquinic acids from Artemisia absinthium against gram-positive pathogenic bacteria. PLoS ONE 6(4), e18127. Published online: April 4, 2011. http://dx.doi.org/10.1371/journal.pone.0018127 Hasson, Christopher J., Ross H. Miller, and Graham E. Caldwell. 2011. Contractile and elastic ankle joint muscular properties in young and older adults. PLoS ONE 6(1), e15953. Published online: January 11, 2011. http://dx.doi.org/10.1371/journal.pone.0015953 Hryshko, Dmytro, María José Luengo-Prado, Bent E. Sørensen. 2011. Childhood determinants of risk aversion: The long shadow of compulsory education. Quantitative Economics 2(1), 37-72. Published online: March 8, 2011. http://dx.doi.org/10.3982/QE2 Iacob, Roxana E., Jianming Zhang, Nathanael S. Gray, and John R. Engen. 2011. Allosteric interactions between the myristate- and ATP-site of the Abl kinase. PLoS ONE 6(1), e15929. Published online: January 10, 2011. http://dx.doi.org/10.1371/journal.pone.0015929 Kemper, Kathi, Sally Bulla, Deborah Krueger, Mary Jane Ott, Jane A. McCool, and Paula Gardiner. 2011. Nurses’ experiences, expectations, and preferences for mind-body practices to reduce stress. BMC Complementary and Alternative Medicine 11, 26. Published online: April 11, 2011. http://dx.doi.org/10.1186/1472-6882-11-26 Kranzer, Katharina, Nienke van Schaik, Unice Karmue, Keren Middelkoop, Elaine Sebastian, Stephen D. Lawn, Robin Wood, and Linda-Gail Bekker. 2011. High prevalence of self-reported undiagnosed HIV despite high coverage of HIV testing: a cross-sectional population based sero-survey in South Africa. PLoS ONE 6(9), e25244. Published online: September 28, 2011. http://dx.doi.org/10.1371/journal.pone.0025244 Krieger, Nancy, Pamela D. Waterman, Anna Kosheleva, Jarvis T. Chen, Dana R. Carney, Kevin W. Smith, Gary G. Bennett, David R. Williams, Elmer Freeman, Beverley Russell, Gisele Thornhill, Kristin Mikolowsky, Rachel Rifkin, and Latrice Samuel. 2011. Exposing racial discrimination: implicit & explicit measures – the My Body, My Story study of 1005 US-born black & white community health center members. PLoS ONE 6(11), e27636. Published online: November 18, 2011. http://dx.doi.org/10.1371/journal.pone.0027636 Lin, H., Tanmoy Das, L. A. Wray, S.-Y. Xu, M. Z. Hasan, and A. Bansil. 2011. An isolated Dirac cone on the surface of ternary tetradymite-like topological insulators. New Journal of Physics 13, 095005. Published online: September 9, 2011. http://dx.doi.org/10.1088/1367-2630/13/9/095005 Milane, Lara , Zhenfeng Duan, and Mansoor Amiji. 2011. Therapeutic efficacy and safety of paclitaxel/lonidamine loaded EGFR-targeted nanoparticles for the treatment of multi-drug resistant cancer. PLoS ONE 6(9), e24075. Published online: September 8, 2011. http://dx.doi.org/10.1371/journal.pone.0024075 Onnela, Jukka-Pekka, Samuel Arbesman, Marta C. Gonzalez, Albert-Laszlo Barabasi, and Nicholas A. Christakis. 2011. Geographic constraints on social network groups. PLoS ONE 6(4), e16939. Published online: April 5, 2011. http://dx.doi.org/10.1371/journal.pone.0016939 Pantazopoulos, Harry , Hamid Dolatshad, and Fred C. Davis. 2011. A fear-inducing odor alters PER2 and c-Fos expression in brain regions involved in fear memory. PLoS ONE 6(5), e20658. Published online: May 31, 2011. http://dx.doi.org/10.1371/journal.pone.0020658 Pei, De-Sheng, Xiao-Jie Yang, Wei Liu, Jeroen E. J. Guikema, Carol E. Schrader, and Phyllis R. Strauss. 2011. A novel regulatory circuit in base excision repair involving AP endonuclease 1, Creb1 and DNA polymerase β. Nucleic Acids Research 39(8), 3156-3165. Published online: December 20, 2010. http://dx.doi.org/10.1093/nar/gkq1142 Robinson, Elizabeth M. , Delbert L. Smee, and Geoffrey C. Trussell. 2011. Green crab (Carcinus maenas) foraging efficiency reduced by fast flows. PLoS ONE 6(6), e21025. Published online: June 7, 2011. http://dx.doi.org/10.1371/journal.pone.0021025 Shulman, Maria , Merav Cohen, Alejandro Soto-Gutierrez, Hiroshi Yagi, Hongyun Wang, Jonathan Goldwasser, Carolyn W. Lee-Parsons, Ofra Benny-Ratsaby, Martin L. Yarmush, and Yaakov Nahmias. 2011. Enhancement of naringenin bioavailability by complexation with hydroxypropoyl-beta-cyclodextrin. PLoS ONE 6(4), e18033. Published online: April 6, 2011. http://dx.doi.org/10.1371/journal.pone.0018033 Sohn, Yunkyu, Myung-Kyu Choi, Yong-Yeol Ahn, Junho Lee, and Jaeseung Jeong. 2011. Topological cluster analysis reveals the systemic organization of the Caenorhabditis elegans connectome. PLoS Computational Biology 7(5), e1001139. Published online: May 2011. http://dx.doi.org/10.1371/journal.pcbi.1001139 Sternad, Dagmar, Masaki O. Abe, Xiaogang Hu, and Hermann Mueller. 2011. Neuromotor noise, error tolerance and velocity-dependent costs in skilled performance. PLoS Computational Biology 7(9), e1002159. Published online: September 2011. http://dx.doi.org/10.1371/journal.pcbi.1002159 Wang, Y. J., H. Lin, Tanmoy Das, M. Z. Hasan, and A. Bansil. 2011. Topological insulators in the quaternary chalcogenide compounds and ternary famatinite compounds. New Journal of Physics 13, 085017. Published online: August 31, 2011. http://dx.doi.org/10.1088/1367-2630/13/8/085017 Whelan, Donna R., Keith R. Bambery, Philip Heraud, Mark J. Tobin, Max Diem, Don McNaughton, and Bayden R. Wood. 2011. Monitoring the reversible B to A-like transition of DNA in eukaryotic cells using Fourier transform infrared spectroscopy. Nucleic Acids Research 39(13), 5439-5448. Published online: March 29, 2011. http://dx.doi.org/10.1093/nar/gkr175 Zerebecki, Robyn A. , and Cascade J. B. Sorte. 2011. Temperature tolerance and stress proteins as mechanisms of invasive species success. PLoS ONE 6(4), e14806. Published online: April 26, 2011. http://dx.doi.org/10.1371/journal.pone.0014806

RSS Feed Available for NU-Authored Articles

I’ve created an RSS feed for anyone who would like to be alerted when new scholarly articles are published by NU-affiliated authors. It pulls information from Web of Science, which includes not only the Science Citation Index but also the Arts and Humanities Citation Index and Social Sciences Citation Index. In total, Web of Science indexes over 10,000 journals, including open-access titles. For current NU faculty, students, and staff: Click here to add the feed to your RSS reader of choice. ⇒ Using this version of the feed will allow you to click through to view more details about an article within Web of Science even if you’re off-campus. (You’ll be prompted to enter your myNEU username and password from off campus.) For alumni and members of the public: Click here to add the feed to your RSS reader of choice. ⇒ This feed still provides complete bibliographic citations for new articles, but if you’re off-campus, you will be unable to access further information, such as the abstracts, via Web of Science. Note: Google Chrome requires a plugin/extension in order to handle RSS feeds correctly, however, Internet Explorer and Firefox are two browsers that work well. Please let me know if you have any difficulties with this feed.

Announcing BioMedCentral Institutional Membership

The Northeastern University Libraries are pleased to announce a new institutional membership in BioMedCentral, effective March 1, 2011. Northeastern joins over 350 institutions worldwide who support BioMedCentral, an online publisher with a pioneering policy of providing free and open access to the peer-reviewed research papers they publish. All research articles published in BioMedCentral’s 213 biomedical and clinical journals are freely and universally accessible online with no barriers to access. And authors keep the copyright to their articles, allowing them to freely reuse and redistribute their research in print and online. Northeastern’s institutional membership helps sustain this publishing model through direct support of BioMedCentral as well as providing to its affiliated authors a 15% discount on the article processing fee paid upon acceptance of their submitted articles. As well as securing Open Access to research, publishing in BioMedCentral’s journals brings many additional benefits, including: • Immediate publication upon acceptance • No extra charge for extensive datasets, comprehensive methods, color figures, and video footage • The ability to track how many people have viewed a paper on BioMedCentral’s website • A large number of journals to choose from, covering all subjects in biology and medicine with different levels of selectivity For more information about BioMedCentral, visit http://www.biomedcentral.com/. For more information about Northeastern’s BioMedCentral membership and how it can benefit you, please contact me at h.corbett@neu.edu.

Publishing Workshop with Gordon Hutner, Editor of American Literary History

Students in the humanities should consider attending this event on Thursday, January 27th. Even if you’re not an English major or grad student, if you’re considering a career in research and publishing in the humanities, I recommend hearing what Dr. Hutner will share about what goes into publishing a scholarly journal! Here are the full details of the event, from the NU calendar: 440 Egan Research Center Thursday, January 27, 2011, 12 – 1:15pm Professor Gordon Hutner, a distinguished scholar of American literature and founding editor of the journal American Literary History, will be conducting a publication workshop to discuss how to publish work in a journal such as ALH. This is an incredible opportunity for students to meet an important figure in the field and to receive an inside view of the publication process. Prof. Hutner will also deliver a talk the same afternoon as part of the Barrs Lecture Series. The talk is titled “The 21st Century American Novel: A History” and will be held at 5:30 p.m. in 340 Egan. Please plan to attend both of these events, and come prepared for lively and valuable discussions. Type of Event: Workshop/Training Audience: Faculty/Staff, Students, Public Cost: None Sponsor: Department of English, Co-Sponsored by the Humanities Center Contact Name: Department of English Contact Phone: 617-373-4540 Contact Email: m.daigle@neu.edu More info: www.english.neu.edu

Student-Run Publications Keep NU Informed, Entertained, and Impressed

It’s pretty common for universities to have a student-run newspaper and a yearbook, and ours, of course, are excellent. But until I started compiling this list, I didn’t realize what a wide variety of other student publications we have on campus. They showcase student research, journalism, literary and artistic talent, and more. (And they’re practically indistinguishable from professionally produced magazines that have much bigger budgets and staffs that aren’t also going to school full-time.) ⇒ The Cauldron http://www.cauldron.neu.edu/ Back issues available online through the Internet Archive! Publishing frequency: Annual Established in: 1917 About: Northeastern University Yearbook ⇒ ECONPress http://www.econpress.org/index.php/econpress Publishing frequency: Twice a year Established in: 2010 About: “ECONPress is a student-run undergraduate research publication that is published twice a year at the beginning of each fall and spring semesters. Each issue features the best economic research of undergraduate students in the local Boston area. ECONPress provides a forum for the economic undergraduate community to engage in active discussion and debate about the topics, theories, and applications they’ve learned in the classroom. Students may submit within three different categories: articles, essays, and research papers. In addition to the publication, ECONPress hosts a biannual conference where authors will have a chance to present their research to the local economic community. Invited authors featured in ECONPress will have the opportunity to present their findings as part of an itinerary that includes a prominent economist. At ECONPress we hope to assist in the preparation of the next generation of economists by providing current undergraduate students a resource to experience and engage in a significant part of the professional research field.” ⇒ The Huntington News http://huntnewsnu.com/ Publishing frequency: Weekly during fall and spring semesters; biweekly during summer Established in: 1926 About: “For 82 years, The Northeastern News was a major source of news at Northeastern University. Now known as The Huntington News, the paper went independent from the university and relocated its office to a leased space at 295 Huntington Avenue in the summer of 2008. In the new space, undergraduate students work alongside Northeastern alumni to maintain the high standard of quality the community has come to expect from its student newspaper.The News is published on Thursdays during the fall and spring semesters with more than 50 students contributing to its production. During the summer semesters, it is published every other Wednesday. The News is the most frequently published and well-read publication on campus. It features news, sports, entertainment and editorial sections, as well as a rotating special section with alternating subject matter.” ⇒ Northeastern University Political Review http://www.nupoliticalreview.com/ Publishing frequency: Quarterly in print with more frequent web updates Established in: 2009 About: “The Northeastern University Political Review seeks to be a nonpartisan platform for students to publish essays and articles of the highest possible caliber on contemporary domestic and international politics, as well as critical reviews of political media. The Political Review aspires to foster a culture of intelligent political discourse among interested individuals while promoting awareness of political issues in the campus community. The organization envisions itself as a place where students with a common interest in politics and world affairs may come together to discuss and develop their views and refine their opinions. The Political Review hopes to reflect the diversity of thought and spirit at Northeastern, including the dual ethic of academic and experiential education our school embodies.” ⇒ NUScience http://www.facebook.com/pages/Nu-Science-Magazine/ Publishing frequency: Twice a semester Established in: 2009 About: “NU Science is Northeastern University’s first ever on-campus science magazine. We are a student-formed and student-run group that meets every Wednesday to discuss scientific events and create a product that educates and enlightens the NU community.” ⇒ Spectrum, Northeastern’s Literary Arts Magazine http://www.spectrum.neu.edu/ Publishing frequency: Three times a year Established in: 1965 About: “Spectrum Literary Arts Magazine is dedicated to showcasing the unique and extraordinary talents of the Northeastern University community. Each issue includes a wide variety of original material submitted by students and faculty. Spectrum’s editors and members work to publish the magazine three times per year: an issue at the end of both the Fall and Spring semesters, and a calendar issue at the beginning of the school year. With the continued efforts of its editors, members, and generous submitters, Spectrum tries to spread the appreciation of literary and visual art.” ⇒ Tastemakers http://tastemakersmag.com/ Publishing frequency: Bimonthly Established in: 2007 About: “tastemakers magazine provides northeastern university students with the opportunity to comment on and interact with the music industry. we print a bi-monthly magazine, publish on the web, produce the tastemakers presents concert series, and host a podcast on iTunes, tastemakers radio. our goal is to bring honest, informed opinions to our readers and help our members develop their craft.” Other student publications that have existed in recent years include The Onyx Informer, The NU Patriot, and Times New Roman, but I was unable to find up-to-date information about them. If you are involved in any of these publications and know that they are still actively publishing, please leave a comment and I’ll update the post. Or, if there are student-run publications (either print or online) that aren’t in this post at all, leave a comment about that, too!